Metabolite Online Spectrum Analysis Center


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Documentation for package ‘Mosaic’ version 0.7.0

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A B C D E F G L M N P R S T U W X

-- A --

addLines addLines
analyzeTable analyzeTable

-- B --

bestgauss bestgauss

-- C --

checkFolders checkFolders
columnSelModule columnSelModule
columnSelModuleUI xcmsModuleUI
constructFeatureTable constructFeatureTable
constructRawLayout constructRawLayout

-- D --

default__root default__root
densplot densplot
densplotModule densplotModule
densplotModuleUI #' NormalizeModuleUI #' #' Normalize a matrix (UI single button) #' #' @param id #' #' @export NormalizeModuleUI <- function(id) ns <- NS(id) actionButton(ns('normbutton'),"Normalize data")
devel__mode devel__mode

-- E --

EICgeneral EICgeneral
EICmodule EICmodule
EICmoduleUI EICmoduleUI
EICplot EICplot
EICtitles EICtitles
exIntensities exIntensities

-- F --

featureCalcs featureCalcs
featurePlotModule featurePlotModule
featurePlotModuleUI featurePlotModuleUI
featureTableNormalize featureTableNormalize
filenamemaker Make filenames for exported .csv or .pdf files
FilterModule FilterModule
FilterModuleUI FilterModuleUI
findsubgraph findsubgraph
foldChange foldChange

-- G --

getgauss getgauss
get_common_dir Get common root folder of file paths
groupedplot Plot summary data on grouped data
groupPlot groupPlot

-- L --

layout_components_qgraph layout_components_qgraph
legendplot legendplot
ListToReactiveValues ListToReactiveValues
LoadNetworkModule LoadNetworkModule
LoadNetworkModuleUI LoadNetworkModuleUI
loadRawM loadRawM
LoadTableModule LoadTableModule
LoadTableModuleUI LoadTableModuleUI

-- M --

makeScanlist makeScanlist
massquery massquery
mergeMS mergeMS
mosaic.colors mosaic.colors
MosaicExamplePreload MosaicExamplePreload
MosaicMinimalServer MosaicMinimalServer
MosaicMinimalUI MosaicMinimalUi
MosaicOptions MosaicOptions
MosCluster MosCluster
MS2BrowserModule MS2BrowserModule
MS2BrowserModuleUI MS2BrowserModule
mttest mttest
multiEIC multiEIC
MultiEICmodule MultiEICmodule
MultiEICmoduleUI MultiEICmoduleUI
multiEICplus multiEICplus
MultiSpecmodule MultiSpecmodule
MultiSpecmoduleUI MultiSpecmoduleUI
multittest multittest
MzqueryModule MzqueryModule
MzqueryModuleUI massquery

-- N --

NetworkModule NetworkModule
NetworkModuleUI NetworkModuleUI

-- P --

Parentsearch Parentsearch
PcaViewModule PcaViewModule
PcaViewModuleUI PCABrowserModuleUI
PlotBrowserModule PlotBrowserModule
PlotBrowserModuleUI PlotBrowserModuleUI
plotlyTextFormatter PlotBrowserModule
PlotModule PlotModule
PlotModuleUI PCABrowserModuleUI
PlotWindow PlotWindow

-- R --

rawEICm rawEICm
rawGrouping rawGrouping
rtadjust rtadjust
rtexport rtexport
RTplot RTplot
runMosaic Run Mosaic
runXcms Run XCMS interface

-- S --

savetable savetable
Specmodule Specmodule
SpecmoduleUI SpecmoduleUI
specplot specplot
sttest sttest
subsetEICs subsetEICs

-- T --

TableAnalysisModule TableAnalysisModule
TableAnalysisModuleUI TableAnalysisModuleUI
tableGrouping tableGrouping
TableModule TableModule
TableModule2 TableModule
TableModule2UI TableModuleUI
TableModuleUI TableModuleUI
ttestx ttestx

-- U --

updateDF updateDF
updateFeatureTable updateDF
updateFTgrouping updateFTgrouping
updateFTIndex updateFTgrouping
updateRawLayout updateRawLayout
updaterModule updaterModule
updaterModuleUI updaterModuleUI

-- W --

writeStatus writeStatus

-- X --

xcmsModule xcmsModule
xcmsModuleUI xcmsModuleUI