| groupPlot {Mosaic} | R Documentation |
generate multiple EICs on one page
groupPlot(EIClist = res, grouping = grouping2, plotProps = list(TIC = T,
cx = 1, colr = topo.colors(nrow(minoritem), alpha = 1), ylim = NULL, xlim =
NULL, lw = 1, midline = 100, yzoom = 1), compProps = list(mfrow = c(1, 2),
oma = c(0, 2, 8, 0), xpd = NA, bg = NA, header = paste0(names(res)), header2 =
NULL, pdfFile = NULL, pdfHi = 6, pdfWi = 12, cx = 1, adductLabs = c("0", "1",
"2")))
EIClist |
list of EICs from Mosaic:multiEIC |
grouping |
a named list of grouped file names (as supplied in $grouping of rawLayout objects) |
plotProps |
a list of settings for the individual plots |
compProps |
layoout options for the composite plot |
plotProps.TIC |
if TRUE, TIC instead of EIC |
plotProps.cx |
numeric(1) font size (character expansion) factor |
plotProps.colr |
color range (actual vector of color values) |
plotProps.ylim |
data.frame or matrix of nrow = number of plotted features, with min and max visible rt value (in seconds) for each feature |
plotProps.xlim |
data.frame or matrix of nrow = number of plotted features, with min and max visible intensity value for each feature |
plotProps.midline |
numeric() of y-axis positions where a dotted vertical line should be plotted |
plotProps.lw |
line width for plot lines |
plotProps.yzoom |
zoom factor into y-axis |
compProps.mfrow |
integer(2) rows and columns for plotting (cf. par(), mfrow) |
compProps.oma |
numeric(4) outer margins (cf. par(), oma) |
compProps.xpd |
drawing outside of plot region, cf. par(), xpd |
compProps.bg |
background color, cf. par(), bg |
compProps.header |
First (title) line of composite plot |
compProps.header2 |
Subtitle line of composite plot |
compProps.pdfFile |
character - if not NULL, plotting result will be saved in a pdf file with this name. |
compProps.pdfHi |
pdf height in inches |
compProps.pdfWi |
pdf width in inches |
compProps.cx |
numeric(1) font size (character expansion) factor |
compProps.adductLabs |
adduct labels (nonfunctional) |