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| addLines | addLines |
| bestgauss | bestgauss |
| columnSelModule | columnSelModule |
| columnSelModuleUI | xcmsModuleUI |
| constructFeatureTable | constructFeatureTable |
| constructRawLayout | constructRawLayout |
| default__root | default__root |
| densplot | densplot |
| densplotModule | densplotModule |
| densplotModuleUI | densplotModuleUI |
| devel__mode | devel__mode |
| EICgeneral | EICgeneral |
| EICmodule | EICmodule |
| EICmoduleUI | EICmoduleUI |
| EICplot | EICplot |
| EICtitles | EICtitles |
| exIntensities | exIntensities |
| featureCalcs | featureCalcs |
| featurePlotModule | featurePlotModule |
| featurePlotModuleUI | featurePlotModuleUI |
| featureTableNormalize | featureTableNormalize |
| filenamemaker | Make filenames for exported .csv or .pdf files |
| FilterModule | FilterModule |
| FilterModuleUI | FilterModuleUI |
| findsubgraph | findsubgraph |
| foldChange | foldChange |
| getgauss | getgauss |
| get_common_dir | Get common root folder of file paths |
| groupedplot | Plot summary data on grouped data |
| groupPlot | groupPlot |
| layout_components_qgraph | layout_components_qgraph |
| legendplot | legendplot |
| ListToReactiveValues | ListToReactiveValues |
| LoadNetworkModule | LoadNetworkModule |
| LoadNetworkModuleUI | LoadNetworkModuleUI |
| loadRawM | loadRawM |
| LoadTableModule | LoadTableModule |
| LoadTableModuleUI | LoadTableModuleUI |
| makeScanlist | makeScanlist |
| massquery | massquery |
| mergeMS | mergeMS |
| mosaic.colors | mosaic.colors |
| MosaicExamplePreload | MosaicExamplePreload |
| MosaicMinimalServer | MosaicMinimalServer |
| MosaicMinimalUi | MosaicMinimalUi |
| MosCluster | MosCluster |
| MS2BrowserModule | MS2BrowserModule |
| MS2BrowserModuleUI | MS2BrowserModule |
| mttest | mttest |
| multiEIC | multiEIC |
| MultiEICmodule | MultiEICmodule |
| MultiEICmoduleUI | MultiEICmoduleUI |
| multiEICplus | multiEICplus |
| MultiSpecmodule | MultiSpecmodule |
| MultiSpecmoduleUI | MultiSpecmoduleUI |
| multittest | multittest |
| MzqueryModule | MzqueryModule |
| MzqueryModuleUI | massquery |
| NetworkModule | NetworkModule |
| NetworkModuleUI | NetworkModuleUI |
| NormalizeModule | NormalizeModule |
| NormalizeModuleUI | NormalizeModuleUI |
| Parentsearch | Parentsearch |
| PlotWindow | PlotWindow |
| rawEICm | rawEICm |
| rawGrouping | rawGrouping |
| rtadjust | rtadjust |
| rtexport | rtexport |
| RTplot | RTplot |
| runMosaic | Run Mosaic |
| runXcms | Run XCMS interface |
| savetable | savetable |
| Specmodule | Specmodule |
| SpecmoduleUI | SpecmoduleUI |
| specplot | specplot |
| sttest | sttest |
| subsetEICs | subsetEICs |
| tableGrouping | tableGrouping |
| TableModule | TableModule |
| TableModule2 | TableModule |
| TableModule2UI | TableModuleUI |
| TableModuleUI | TableModuleUI |
| ttestx | ttestx |
| updateDF | updateDF |
| updateFeatureTable | updateDF |
| updateFTgrouping | updateFTgrouping |
| updateFTIndex | updateFTgrouping |
| updateRawLayout | updateRawLayout |
| updaterModule | updaterModule |
| updaterModuleUI | updaterModuleUI |
| writeStatus | writeStatus |
| xcmsModule | xcmsModule |
| xcmsModuleUI | xcmsModuleUI |